GSI case10 issue

Submitted by x.ranyer on Thu, 09/02/2021 - 04:14

Hi, everybody!

 

I try to run GSI-CMAQ,  but it crashed. (i run case1 successfully.)

 

LINUX_PBS error:

 Create working directory: /mnt/data5/model/comGSIv3.7_EnKFv1.3/case10/cmaq
 Copy GSI executable, background file, and link observation bufr to working directory
 Copy fixed files and link CRTM coefficient files to working directory
 Build the namelist 
 Run GSI with CMAQ background
ERROR:  crashed  Exit status=24

 

and stdout:

```

 LAEROANA_GOCART = F,
 L_AODERR_TABLE  = F,
 AOD_QA_LIMIT    =           3,
 LUSE_DEEPBLUE   = F,
 AERO_RATIOS     = F,
 WRF_PM2_5       = F
 /
 &NST
 NST_GSI =           0,
 NSTINFO =           0,
 ZSEA1   =           0,
 ZSEA2   =           0,
 FAC_DTL =           1,
 FAC_TSL =           1
 /
forrtl: severe (24): end-of-file during read, unit 15, file /mnt/data5/model/comGSIv3.7_EnKFv1.3/case10/cmaq/sigf03
Image              PC                Routine            Line        Source
gsi.x              00000000019100E8  Unknown               Unknown  Unknown
gsi.x              000000000193BF75  Unknown               Unknown  Unknown
gsi.x              000000000055E7E4  gridmod_mp_init_r        1597  gridmod.F90
gsi.x              00000000004188B7  gsimod_mp_gsimain        1578  gsimod.F90
gsi.x              000000000040F7E5  MAIN__                    614  gsimain.f90
gsi.x              000000000040F79E  Unknown               Unknown  Unknown
libc-2.17.so       00002AF1C720F445  __libc_start_main     Unknown  Unknown
gsi.x              000000000040F6A9  Unknown               Unknown  Unknown
forrtl: severe (24): end-of-file during read, unit 15, file /mnt/data5/model/comGSIv3.7_EnKFv1.3/case10/cmaq/sigf03
Image              PC                Routine            Line        Source
gsi.x              00000000019100E8  Unknown               Unknown  Unknown
gsi.x              000000000193BF75  Unknown               Unknown  Unknown
gsi.x              000000000055E7E4  gridmod_mp_init_r        1597  gridmod.F90
gsi.x              00000000004188B7  gsimod_mp_gsimain        1578  gsimod.F90
gsi.x              000000000040F7E5  MAIN__                    614  gsimain.f90
gsi.x              000000000040F79E  Unknown               Unknown  Unknown
libc-2.17.so       00002B7F6B337445  __libc_start_main     Unknown  Unknown
gsi.x              000000000040F6A9  Unknown               Unknown  Unknown
 

 

comgsi_run_chem.ksh:

``` 

GSIPROC=10                                                                                                                          
 ARCH='LINUX_PBS'               

 ANAL_TIME=2012060318 

JOB_DIR=/mnt/data5/model/comGSIv3.7_EnKFv1.3/case10   

OBS_ROOT=/mnt/data5/model/comGSIv3.7_EnKFv1.3/case10/chemdata/obs  

BK_ROOT=/mnt/data5/model/comGSIv3.7_EnKFv1.3/case10/chemdata/bk  

GSI_ROOT=/mnt/data5/model/comGSIv3.7_EnKFv1.3    

CRTM_ROOT=/mnt/data5/model/comGSIv3.7_EnKFv1.3/CRTM

 GSI_EXE=${JOB_DIR}/gsi.x  

WORK_ROOT=${JOB_DIR}/${RUN_NAME}   

FIX_ROOT=${GSI_ROOT}/fix  

GSI_NAMELIST=${GSI_ROOT}/ush/comgsi_namelist_chem.sh  

PREPBUFR=${OBS_ROOT}/anow.2012060318.bufr  

BK_FILE=${BK_ROOT}/wrfinput_d01_2012-06-03_18:00:00 

bk_core=CMAQ

obs_type=PM25  

if_clean=clean 

```

(base) [ddd@h1 case10]$ pwd
/mnt/data5/model/comGSIv3.7_EnKFv1.3/case10

chemdata/bk:
total 4468148
-rw-r--r-- 1 nobody nobody  384193400 Jul  7  2017 cmaq2gsi_4.7_20130621_120000.bin
-rw-r--r-- 1 nobody nobody  104278448 Jul  7  2017 wrfinput_d01_2012-06-03_18:00:00

chemdata/obs:
total 2068
-rw-r--r-- 1 nobody nobody  144856 Jul  7  2017 anow.2012060318.bufr
-rw-r--r-- 1 nobody nobody  125096 Jul  7  2017 anow.2013062112.bufr
-rw-r--r-- 1 nobody nobody 1840288 Jul  7  2017 Aqua_Terra_AOD_BUFR:2012-06-03_00:00:00

 

I tried:
1.netcdf-4.7->netcdf-4.1.3  

2.BK_FILE used new file wrfinput_d01_2021-08-31_12:00:00 or wrfout_d01_2021-08-31_12:00:00

 

but it doesn't work.

 

 

PS:

i can't find v.modis_aqua.TauCoeff.bin, v.modis_terra.TauCoeff.bin, seviri_m11.SpcCoeff.bin and seviri_m11.TauCoeff.bin in CRTM_v2.3.0.tar.gz

 

i don't know what to do, could anybody help me !

Thank you for your time!

Best!

I get it, using the binary file :

  PREPBUFR=${OBS_ROOT}/anow.2013062112.bufr
  BK_FILE=${BK_ROOT}/cmaq2gsi_4.7_20130621_120000.bin
 

But,I crashed again:

forrtl: severe (174): SIGSEGV, segmentation fault occurred

 

 

Permalink

In reply to by x.ranyer

Hi,

What are the lines leading up to the segmentation fault? This could relate to memory or mpi issues, which can sometimes happen like this during reads and writes. I suggest trying to provide more memory to each task and double check that mpi is being invoked correctly and see if anything changes.

 

Thanks,

 

Will